dependant on the software, alot of them out there have plugins that will eliminate the annoying popping. firstly, i would figure out what program youre wanting to use. do you have an interface to convert the audio? many interfaces only support certain software, so keep that in mind.
I'm in a TV production class at school and the only thing I can think of without software is to talk over the mic, not into it. perhaps buy a pop filter maybe.
Sorry I can't say anything about software help but hopefully this will help in the future.
Using AUDACITY you can zoom right down to the microsecond it occurs, then lower the amplitude to the correct level and you will never be able to tell it was worked on. But if you have a lot of clicks, I guess that would be tedious.