I'm not even sure if a skinning program will change it, but like bmcgonag said, you'll get used to it.
I actually don't use the buttons. I either use keyboard shortcuts (Apple + W or Apple + Q) or just double click the title bar to minimize.
I've recently switched and I find the minimizing/maximizing/close buttons on the top left side of all the windows to be very awkward. Is there a way to swap it to the right side like Windows?