Little Snitch doesn't track connections coming from the outside, rather it is designed to keep an eye on communication happening from your computer out. That is, if you launch an application and it wants to connect to an external site, unless you've explicitly allowed that application to do so, it will be blocked.
To prevent unauthorized access to your computer, you want to ensure that you have a hardware firewall in place with all ports closed and as Harry said, safe browsing practices..