Help me to understand your problem. Here is what I understand at this time. You are running OS 9.2.2 on a G4 tower with 1GB or RAM.
There is 2 internal disk drives installed, a 40GB and a 80GB. The 80GB drive is partitioned (40 and 40).
You are using one of the partitions as the system drive , plus data. Whereas the the two remaining drives which are 40GB drives, you are using as data drives.
Now here is the question. It sounds like you are having problems with the system partition and the remianing disk partitions are okay.
The first thing I would do is make sure you have a complete back up of all of your data.
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I have tried to run Norton Utilities but it just sits there.
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Which application did you run from the Norton Utilities?
I known from time to time it is a good ideas in OS 9 to rebuild the desktop and defrag the disk. Have you rebuilt the desktop file on all three partitions? Also have you run speed disk on the all three partitions?