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MightyGem

 
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Member Since: Nov 29, 2010
Location: Warrington, UK
Posts: 1,573
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Mac Specs: PPC Mini, 10.4.11. Intel Mini, 10.6.8. White MacBook, 10.8.5. iPhone 3GS.

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You can use MPEGStreamclip to convert the avi files, either to DV, which iMovie uses, or to Quicktime, using the Apple Intermediate Codec compression option.
Squared 5 - MPEG Streamclip video converter for Mac and Windows

For the mkv files, if you install Perian, they should play in Quicktime, and you should then be able to save them as a DV file or Quicktime file.
Perian - The swiss-army knife of QuickTimeŽ components
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